Publications

Curated research outputs from the MLKD group.

all years

all types Journal Conference Book / Chapter Preprint

2007

Learning bayesian networks consistent with the optimal branching

Alexandra M. Carvalho, Arlindo L. Oliveira

conference summary

AN EFFICIENT BICLUSTERING ALGORITHM FOR FINDING GENES WITH SIMILAR PATTERNS IN TIME-SERIES EXPRESSION DATA

Sara C. Madeira, Arlindo L. Oliveira

conference summary

Efficient Haplotype Inference with Pseudo-boolean Optimization

Ana Graça, João Marques‐Silva, Inês Lynce, Arlindo L. Oliveira

Lecture notes in computer science book

Efficient Learning of Bayesian Network Classifiers

Alexandra M. Carvalho, Arlindo L. Oliveira, Marie‐France Sagot

Lecture notes in computer science book

Semi-supervised single-label text categorization using centroid-based classifiers

Ana Cardoso-Cachopo, Arlindo L. Oliveira

conference summary

Generalization of Pattern-Growth Methods for Sequential Pattern Mining with Gap Constraints

Cláudia Antunes, Arlindo L. Oliveira

Lecture notes in computer science book

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae

Pedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Helio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá‐Correia, Arlindo L. Oliveira, Ana T. Freitas

Nucleic Acids Research journal summary

2006

Additional materials and results for MUSA

Nuno D. Mendes, Ana Casimiro, Pedro M. Santos, Arlindo L. Oliveira, Ana T. Freitas

conference

Probabilistic Testability Analysis and DFT Methods at RTL

J. Fernandes, Marcelino Santos, Arlindo L. Oliveira, João Teixeira

conference summary

Efficient generation of super condensed neighborhoods

Luís M. S.Russo, Arlindo L. Oliveira

Journal of Discrete Algorithms journal

DFT and Probabilistic Testability Analysis at RTL

José M. Fernandes, Marcelino Santos, Arlindo L. Oliveira, J.P. Teixeira

Proceedings journal summary

Empirical Evaluation of Centroid-based Models for Single-label Text Categorization

Ana Cardoso-Cachopo, Arlindo L. Oliveira, Rua Alves Redol

conference summary

Dotted Suffix Trees A Structure for Approximate Text Indexing

Luís Pedro Coelho, Arlindo L. Oliveira

Lecture notes in computer science book

A Compressed Self-index Using a Ziv-Lempel Dictionary

Luís M. S.Russo, Arlindo L. Oliveira

Lecture notes in computer science book

MUSA: a parameter free algorithm for the identification of biologically significant motifs

Nuno D. Mendes, Ana Casimiro, Pedro M. Santos, Isabel Sá‐Correia, Arlindo L. Oliveira, Ana T. Freitas

Bioinformatics journal summary

An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences

Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie‐France Sagot

IEEE/ACM Transactions on Computational Biology and Bioinformatics journal summary

2005

Faster Generation of Super Condensed Neighbourhoods Using Finite Automata

Luís M. S.Russo, Arlindo L. Oliveira

Lecture notes in computer science book

Using a More Powerful Teacher to Reduce the Number of Queries of the L* Algorithm in Practical Applications

André L. Martins, H. Sofia Pinto, Arlindo L. Oliveira

Lecture notes in computer science book

An Efficient Algorithm for Generating Super Condensed Neighborhoods

Luís M. S.Russo, Arlindo L. Oliveira

Lecture notes in computer science book

Constraint Relaxations for Discovering Unknown Sequential Patterns

Cláudia Antunes, Arlindo L. Oliveira

Lecture notes in computer science book

A HIGHLY SCALABLE ALGORITHM FOR THE EXTRACTION OF CIS-REGULATORY REGIONS

Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie‐France Sagot

preprint summary

Inference of regular languages using state merging algorithms with search

Miguel Bugalho, Arlindo L. Oliveira

Pattern Recognition journal

A Linear Time Biclustering Algorithm for Time Series Gene Expression Data

Sara C. Madeira, Arlindo L. Oliveira

Lecture notes in computer science book

2004

UN MODELO DE RECUPERACIÓN DE INFORMACIÓN BASADO EN SVMs INFORMATION RETRIEVAL MODEL BASED ON SVMS

Mora Maldonado, Arlindo L. Oliveira, Jorge Sánchez

conference summary

Special issue on string processing and information retrieval

Alberto H. F. Laender, Arlindo L. Oliveira

Journal of Discrete Algorithms journal

Un modelo de recuperación de información basado en SVMs

Fernanda Maldonado Naude, Arlindo L. Oliveira, J. Alfredo Sánchez

conference summary

A New Quick Point Location Algorithm

José Poveda, Michael Gould, Arlindo L. Oliveira

Lecture notes in computer science book

Metrics for Grid Applicability: A Distributed Elliptic Curve Platform Assessment

Paulo Trezentos, Arlindo L. Oliveira

Lecture notes in computer science book

Towards Automatic Learning of a Structure Ontology For Technical Articles

André L. Martins, H. Sofia Pinto, Arlindo L. Oliveira

conference summary

Mining Patterns Using Relaxations of User Defined Constraints

Cláudia Antunes, Arlindo L. Oliveira, Técnico Inesc-id

conference summary

A probabilistic method for the computation of testability of RTL constructs

J. Fernandes, Marcelino Santos, Arlindo L. Oliveira, João Teixeira

Proceedings Design, Automation and Test in Europe Conference and Exhibition conference summary

SEQUENTIAL PATTERN MINING WITH APPROXIMATED CONSTRAINTS

Cláudia Antunes, Arlindo L. Oliveira

conference summary

Efficient Extraction of Structured Motifs Using Box-Links

Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie-France Sagot

Lecture notes in computer science book

A parallel algorithm for the extraction of structured motifs

Alexandra M. Carvalho, Arlindo L. Oliveira, Ana T. Freitas, Marie‐France Sagot

preprint summary

Sequential Pattern Mining Algorithms: Trade-offs between Speed and Memory

Cláudia Antunes, Arlindo L. Oliveira

conference summary

STING Contacts: a web-based application for identification and analysis of amino acid contacts within protein structure and across protein interfaces

A. L. Mancini, R. H. Higa, Arlindo L. Oliveira, F. Dominiquini, Paula R. Kuser, M. E. B. Yamagishi, Roberto Coiti Togawa, Goran Neshich

Bioinformatics journal summary

Biclustering algorithms for biological data analysis: a survey

Sara C. Madeira, Arlindo L. Oliveira

IEEE/ACM Transactions on Computational Biology and Bioinformatics journal summary

2003

String processing and information retrieval : 10th International Symposium, SPIRE 2003, Manaus, Brazil, October 8-10, 2003 : proceedings

Mário A. Nascimento, Edleno Silva de Moura, Arlindo L. Oliveira

book

Bottom-up methodology for test preparation and refinement

J.A. Gracio, P.A. Bicudo, N.N. Rua, Arlindo L. Oliveira, C.F.B. Almeida, J.P. Teixeira

conference summary

A Data Mining Approach to Credit Risk Evaluation and Behaviour Scoring

Sara C. Madeira, Arlindo L. Oliveira, Catarina S. Conceição

Lecture notes in computer science book

Bottom-up testing methodology for VLSI

J.P. Teixeira, C.F.B. Almeida, J.A. Gracio, P.A. Bicudo, Arlindo L. Oliveira, N.N. Rua

conference summary

Test preparation and fault analysis using a bottom-up methodology

J.A. Gracio, P.A. Bicudo, N.N. Rua, Arlindo L. Oliveira, C.F.B. Almeida, J.P. Teixeira

conference summary

On the problem of gate assignment under different rise and fall delays

Arlindo L. Oliveira, Rajeev Murgai

IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems journal summary

Implicit Resolution of the Chapman-Kolmogorov Equations for Sequential Circuits: An Application in Power Estimation

Ana T. Freitas, Arlindo L. Oliveira

2003 Design, Automation and Test in Europe Conference and Exhibition conference summary

Analog Macromodeling using Kernel Methods

Joel Phillips, João L. Afonso, Arlindo L. Oliveira, L. Miguel Silveira

ICCAD-2003. International Conference on Computer Aided Design (IEEE Cat. No.03CH37486) conference summary

An Empirical Comparison of Text Categorization Methods

Ana Cardoso-Cachopo, Arlindo L. Oliveira

Lecture notes in computer science book

2002

Power optimization of combinational modules using self-timed precomputation

APL Mota, José Monteiro, Arlindo L. Oliveira

conference summary

Circuit partitioning techniques for power estimation using the full set of input correlations

Ana T. Freitas, Arlindo L. Oliveira

conference summary

LSAT-an algorithm for the synthesis of two level threshold gate networks

Arlindo L. Oliveira, Alberto Sangiovanni‐Vincentelli

conference summary

String processing and information retrieval : 9th International Symposium, SPIRE 2002, Lisbon, Portugal, September 11-13, 2002 : proceedings

Alberto H. F. Laender, Arlindo L. Oliveira

book