AFAlexandre FranciscoCurrent PhD Students CompletedWebsitePublications2025Pre-trained VGG16 model for forensic dental age estimationValon Nushi, Rui Santos, Hrvoje Brkić, Arlindo L. Oliveira, Alexandre P. Francisco, Cristiana Palmela PereiraEgyptian Journal of Forensic Sciences journal summary2018Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke PatientsMiguel Monteiro, Ana Catarina Fonseca, Ana T. Freitas, Teresa Pinho e Melo, Alexandre P. Francisco, José M. Ferro, Arlindo L. OliveiraIEEE/ACM Transactions on Computational Biology and Bioinformatics journal summary2013The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation inSaccharomyces cerevisiaeMiguel C. Teixeira, Pedro T. Monteiro, Joana F. Guerreiro, Joana P. Gonçalves, Nuno P. Mira, Sandra C. dos Santos, Tânia R. Cabrito, Margarida Palma, Catarina Costa, Alexandre P. Francisco, Sara C. Madeira, Arlindo L. Oliveira, Ana Teresa Freitas, Isabel Sá‐CorreiaNucleic Acids Research journal summary2011On Community Detection in Very Large NetworksAlexandre P. Francisco, Arlindo L. OliveiraCommunications in computer and information science book Mining query log graphs towards a query folksonomyAlexandre P. Francisco, Ricardo Baeza‐Yates, Arlindo L. OliveiraConcurrency and Computation Practice and Experience journal summaryFully Generalized Graph CoresAlexandre P. Francisco, Arlindo L. OliveiraCommunications in computer and information science book TFRank: network-based prioritization of regulatory associations underlying transcriptional responsesJoana P. Gonçalves, Alexandre P. Francisco, Nuno P. Mira, Miguel C. Teixeira, Isabel Sá‐Correia, Arlindo L. Oliveira, Sara C. MadeiraBioinformatics journal summary2010Using graph modularity analysis to identify transcription factor binding sitesAlexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira preprint summaryMining Large Query Induced Graphs towards a Hierarchical Query FolksonomyAlexandre P. Francisco, Ricardo Baeza‐Yates, Arlindo L. OliveiraLecture notes in computer science book YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interfaceD. Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra C. dos Santos, Tânia R. Cabrito, Alexandre P. Francisco, Sara C. Madeira, R. S. Aires, Arlindo L. Oliveira, Isabel Sá‐Correia, Ana T. FreitasNucleic Acids Research journal summary2008Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence GraphAlexandre P. Francisco, Arlindo L. Oliveira, Ana T. FreitasLecture notes in computer science book Clique Analysis of Query Log GraphsAlexandre P. Francisco, Ricardo Baeza‐Yates, Arlindo L. OliveiraLecture notes in computer science book 2007YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiaePedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Helio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá‐Correia, Arlindo L. Oliveira, Ana T. FreitasNucleic Acids Research journal summaryDissertations supervisedImputation Techniques for Clinical Data of Ischemic Stroke PatientsFilipa de Matos MarquesSupervised by Arlindo L. Oliveira, Alexandre Paulo Lourenço Francisco.Finished MSc← All people
Pre-trained VGG16 model for forensic dental age estimationValon Nushi, Rui Santos, Hrvoje Brkić, Arlindo L. Oliveira, Alexandre P. Francisco, Cristiana Palmela PereiraEgyptian Journal of Forensic Sciences journal summary
Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke PatientsMiguel Monteiro, Ana Catarina Fonseca, Ana T. Freitas, Teresa Pinho e Melo, Alexandre P. Francisco, José M. Ferro, Arlindo L. OliveiraIEEE/ACM Transactions on Computational Biology and Bioinformatics journal summary
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation inSaccharomyces cerevisiaeMiguel C. Teixeira, Pedro T. Monteiro, Joana F. Guerreiro, Joana P. Gonçalves, Nuno P. Mira, Sandra C. dos Santos, Tânia R. Cabrito, Margarida Palma, Catarina Costa, Alexandre P. Francisco, Sara C. Madeira, Arlindo L. Oliveira, Ana Teresa Freitas, Isabel Sá‐CorreiaNucleic Acids Research journal summary
On Community Detection in Very Large NetworksAlexandre P. Francisco, Arlindo L. OliveiraCommunications in computer and information science book
Mining query log graphs towards a query folksonomyAlexandre P. Francisco, Ricardo Baeza‐Yates, Arlindo L. OliveiraConcurrency and Computation Practice and Experience journal summary
Fully Generalized Graph CoresAlexandre P. Francisco, Arlindo L. OliveiraCommunications in computer and information science book
TFRank: network-based prioritization of regulatory associations underlying transcriptional responsesJoana P. Gonçalves, Alexandre P. Francisco, Nuno P. Mira, Miguel C. Teixeira, Isabel Sá‐Correia, Arlindo L. Oliveira, Sara C. MadeiraBioinformatics journal summary
Using graph modularity analysis to identify transcription factor binding sitesAlexandre P. Francisco, Sophie Schbath, Ana T. Freitas, Arlindo L. Oliveira preprint summary
Mining Large Query Induced Graphs towards a Hierarchical Query FolksonomyAlexandre P. Francisco, Ricardo Baeza‐Yates, Arlindo L. OliveiraLecture notes in computer science book
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interfaceD. Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra C. dos Santos, Tânia R. Cabrito, Alexandre P. Francisco, Sara C. Madeira, R. S. Aires, Arlindo L. Oliveira, Isabel Sá‐Correia, Ana T. FreitasNucleic Acids Research journal summary
Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence GraphAlexandre P. Francisco, Arlindo L. Oliveira, Ana T. FreitasLecture notes in computer science book
Clique Analysis of Query Log GraphsAlexandre P. Francisco, Ricardo Baeza‐Yates, Arlindo L. OliveiraLecture notes in computer science book
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiaePedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Helio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá‐Correia, Arlindo L. Oliveira, Ana T. FreitasNucleic Acids Research journal summary
Imputation Techniques for Clinical Data of Ischemic Stroke PatientsFilipa de Matos MarquesSupervised by Arlindo L. Oliveira, Alexandre Paulo Lourenço Francisco.Finished MSc