Publications

Curated research outputs from the MLKD group.

all types Journal Conference Book / Chapter Preprint

2009

Identification of Regulatory Modules in Time Series Gene Expression Data Using a Linear Time Biclustering Algorithm

Sara C. Madeira, Miguel C. Teixeira, Isabel Sá‐Correia, Arlindo L. Oliveira

IEEE/ACM Transactions on Computational Biology and Bioinformatics journal summary

2008

Cost effectiveness analysis of carotid doppler ultrasound examination in patients with significant left main coronary artery stenosis

Arlindo L. Oliveira, Márcio Sommer Bittencourt, Anthony Pereira, Luı́z Antonio Machado César, Luís Henrique Wolff Gowdak

Circulation journal

USING GRAMMATICAL INFERENCE TECHNIQUES TO LEARN ONTOLOGIES THAT DESCRIBE THE STRUCTURE OF DOMAIN INSTANCES

André L. Martins, H. Sofia Pinto, Arlindo L. Oliveira

Applied Artificial Intelligence journal summary

An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance

Ana Casimiro, Susana Vinga, Ana T. Freitas, Arlindo L. Oliveira

BMC Bioinformatics journal summary

ccrB typing tool: an online resource for staphylococci ccrB sequence typing

Duarte C. Oliveira, Marcelino Santos, Catarina Milheiriço, João André Carriço, Susana Vinga, Arlindo L. Oliveira, Hermı́nia de Lencastre

Journal of Antimicrobial Chemotherapy journal summary

A compressed self-index using a Ziv–Lempel dictionary

Luís M. S.Russo, Arlindo L. Oliveira

Information Retrieval journal

2007

P1303 clfB typing in Staphylococcus aureus: online database for dis-play, clustering analysis and storage of clfB DNA sequences

Angelita dos Reis Gomes, João André Carriço, Susana Vinga, Arlindo L. Oliveira, Mihaela Zavolan, H. de Lencastre

International Journal of Antimicrobial Agents journal

IR-BASE: An Integrated Framework for the Research and Teaching of Information Retrieval Technologies

Pável Calado, Ana Cardoso-Cachopo, Arlindo L. Oliveira

Electronic workshops in computing journal summary

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae

Pedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Helio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá‐Correia, Arlindo L. Oliveira, Ana T. Freitas

Nucleic Acids Research journal summary

2006

Efficient generation of super condensed neighborhoods

Luís M. S.Russo, Arlindo L. Oliveira

Journal of Discrete Algorithms journal

DFT and Probabilistic Testability Analysis at RTL

José M. Fernandes, Marcelino Santos, Arlindo L. Oliveira, J.P. Teixeira

Proceedings journal summary

MUSA: a parameter free algorithm for the identification of biologically significant motifs

Nuno D. Mendes, Ana Casimiro, Pedro M. Santos, Isabel Sá‐Correia, Arlindo L. Oliveira, Ana T. Freitas

Bioinformatics journal summary

An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences

Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira, Marie‐France Sagot

IEEE/ACM Transactions on Computational Biology and Bioinformatics journal summary

2005

Inference of regular languages using state merging algorithms with search

Miguel Bugalho, Arlindo L. Oliveira

Pattern Recognition journal

2004

Special issue on string processing and information retrieval

Alberto H. F. Laender, Arlindo L. Oliveira

Journal of Discrete Algorithms journal

STING Contacts: a web-based application for identification and analysis of amino acid contacts within protein structure and across protein interfaces

A. L. Mancini, R. H. Higa, Arlindo L. Oliveira, F. Dominiquini, Paula R. Kuser, M. E. B. Yamagishi, Roberto Coiti Togawa, Goran Neshich

Bioinformatics journal summary

Biclustering algorithms for biological data analysis: a survey

Sara C. Madeira, Arlindo L. Oliveira

IEEE/ACM Transactions on Computational Biology and Bioinformatics journal summary

2003

On the problem of gate assignment under different rise and fall delays

Arlindo L. Oliveira, Rajeev Murgai

IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems journal summary

2002

Implicit FSM decomposition applied to low-power design

José Monteiro, Arlindo L. Oliveira

IEEE Transactions on Very Large Scale Integration (VLSI) Systems journal summary

2001

Efficient Algorithms for the Inference of Minimum Size DFAs

Arlindo L. Oliveira, João P.M. Silva

Machine Learning journal

Techniques for the creation of digital watermarks in sequential circuit designs

Arlindo L. Oliveira

IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems journal summary

1999

A new algorithm for exact reduction of incompletely specified finite state machines

Jorge Martínez Peña, Arlindo L. Oliveira

IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems journal summary

1998

Exact minimization of binary decision diagrams using implicit techniques

Arlindo L. Oliveira, Luca P. Carloni, Tiziano Villa, Alberto Sangiovanni‐Vincentelli

IEEE Transactions on Computers journal summary

1996

Using the Minimum Description Length Principle to Infer Reduced Ordered Decision Graphs

Arlindo L. Oliveira, Alberto Sangiovanni‐Vincentelli

Machine Learning journal