Arlindo Oliveira

Arlindo Oliveira

Faculty

machine learning · bioinformatics · computational biology

LinkedIn ORCID Ciencia Vitae DBLP

Publications

2024

Multiple Instance Learning for WSI: A comparative analysis of attention-based approaches

Martim Afonso, Praphulla Bhawsar, Monjoy Saha, Jonas S. Almeida, Arlindo L. Oliveira

Journal of Pathology Informatics journal summary

Training environmental sound classification models for real-world deployment in edge devices

Manuel Goulão, L. Bandeira, Bruno Martins, Arlindo L. Oliveira

Discover Applied Sciences journal summary

LumberChunker: Long-Form Narrative Document Segmentation

André V. Duarte, João Marques, Miguel Graça, Miguel Freire, Lei Li, Arlindo L. Oliveira

arXiv (Cornell University) conference summary

2023

DeepThought: An Architecture for Autonomous Self-motivated Systems

Arlindo L. Oliveira, Tiago Domingos, Mário A. T. Figueiredo, Pedro U. Lima

arXiv (Cornell University) preprint summary

Development of a machine learning model using 12-lead ECG to improve acute dianosis of pulmonary embolism

B V Silva, João Silva Marques, Miguel Nobre Menezes, Arlindo L. Oliveira, Fausto J. Pinto

European Heart Journal journal summary

Matching the Neuronal Representations of V1 is Necessary to Improve Robustness in CNNs with V1-like Front-ends

Ruxandra Bărbulescu, Tiago Marques, Arlindo L. Oliveira

arXiv (Cornell University) preprint summary

Connecting metrics for shape-texture knowledge in computer vision

Tiago Oliveira, Tiago Marques, Arlindo L. Oliveira

arXiv (Cornell University) preprint summary

Potential and limitations of computed tomography images as predictors of the outcome of ischemic stroke events: a review

Gonçalo Oliveira, Ana Catarina Fonseca, José M. Ferro, Arlindo L. Oliveira

Frontiers in Stroke journal summary

Augmentation-Based Approaches for Overcoming Low Visibility in Street Object Detection

João Pedro Novo, Manuel Goulão, L. Bandeira, Bruno Martins, Arlindo L. Oliveira

conference summary

Improving Embeddings for High-Accuracy Transformer-Based Address Matching Using a Multiple in-Batch Negatives Loss

André V. Duarte, Arlindo L. Oliveira

conference summary

Improving Address Matching Using Siamese Transformer Networks

André V. Duarte, Arlindo L. Oliveira

Lecture notes in computer science book

Pretraining the Vision Transformer Using Self-Supervised Methods for Vision Based Deep Reinforcement Learning

Manuel Goulão, Arlindo L. Oliveira

Frontiers in artificial intelligence and applications journal summary

Temporary impact on medical system and effectiveness of mitigation strategies after COVID-19 policy adjustment in China: a modeling study

Chitin Hon, Jingyi Liang, Ruihan Chen, Zhijie Lin, Yangqianxi Wang, Wei He, Ruibin Liu, Jiaxi Sun, Qianyin Li, Lixi Liang, Minyi Zhang, Zichen Chang, Yinqiu Guo, Wenting Zeng, Tie Liu, Arlindo L. Oliveira

Frontiers in Public Health journal summary

Segmentation of X‐ray coronary angiography with an artificial intelligence deep learning model: Impact in operator visual assessment of coronary stenosis severity

Miguel Nobre Menezes, Beatríz Silva, João Lourenço Silva, Tiago Rodrigues, João Silva Marques, Cláudio Guerreiro, J Guedes, Manuel Oliveira‐Santos, Arlindo L. Oliveira, Fausto J. Pinto

Catheterization and Cardiovascular Interventions journal summary

Artificial Intelligence: Historical Context and State of the Art

Arlindo L. Oliveira, Mário A. T. Figueiredo

Law, governance and technology series book summary

Deep Learning-Based Extraction of Biomarkers for the Prediction of the Functional Outcome of Ischemic Stroke Patients

Gonçalo Oliveira, Ana Catarina Fonseca, José M. Ferro, Arlindo L. Oliveira

Diagnostics journal summary

Learning the dynamics of realistic models of C. elegans nervous system with recurrent neural networks

Ruxandra Bărbulescu, Gonçalo Mestre, Arlindo L. Oliveira, L. Miguel Silveira

Scientific Reports journal summary

Multidisciplinary Perspectives on Artificial Intelligence and the Law

Henrique Sousa Antunes, Pedro Miguel Freitas, Arlindo L. Oliveira, Clara Martins Pereira, Elsa Vaz de Sequeira, Luís Barreto Xavier

Law, governance and technology series book summary

Coronary X-ray angiography segmentation using Artificial Intelligence: a multicentric validation study of a deep learning model

Miguel Nobre Menezes, João Lourenço Silva, Beatríz Silva, Tiago Rodrigues, Cláudio Guerreiro, J Guedes, Manuel Oliveira‐Santos, Arlindo L. Oliveira, Fausto J. Pinto

The International Journal of Cardiovascular Imaging journal summary

Artificial intelligence-based diagnosis of acute pulmonary embolism: Development of a machine learning model using 12-lead electrocardiogram

Beatriz Valente Silva, João Marques, Miguel Nobre Menezes, Arlindo L. Oliveira, Fausto J. Pinto

Revista Portuguesa de Cardiologia journal summary

2022

COVID-19 Contact Tracing Applications in Portugal: Effectiveness and Privacy Issues

Arlindo L. Oliveira

International series on intelligent systems, control and automation: science and engineering book

Using a Siamese Network to Accurately Detect Ischemic Stroke in Computed Tomography Scans

Ana Beatriz Vieira, Ana Catarina Fonseca, José M. Ferro, Arlindo L. Oliveira

Lecture notes in computer science book

A blueprint for conscious machines

Arlindo L. Oliveira

Proceedings of the National Academy of Sciences journal summary

Stenosis Detection in X-ray Coronary Angiography with Deep Neural Networks Leveraged by Attention Mechanisms

Pedro Van Stralen, Dinis L. Rodrigues, Arlindo L. Oliveira, Miguel Nobre Menezes, Fausto J. Pinto

conference summary

Assessing Policy, Loss and Planning Combinations in Reinforcement Learning Using a New Modular Architecture

Tiago Gaspar Oliveira, Arlindo L. Oliveira

Lecture notes in computer science book

Dissertations supervised

Text Segmentation by TextTiling with Modern Neural Retrieval Models

Supervised by Bruno Martins, Arlindo L. Oliveira

Open for application MSc

Sign Language Recognition with Large Vision-and-Language Models

Supervised by Bruno Martins, Arlindo L. Oliveira

Open for application MSc

Improving Medical Image Segmentation through Human Feedback and Reward Modeling

Supervised by Arlindo L. Oliveira

Open for application MSc

AI-Driven Pulmonary Function Analysis for Respiratory Screening

Supervised by Arlindo L. Oliveira

Open for application MSc

"Agentification" in a Manufacturing Context

Supervised by Arlindo L. Oliveira

Open for application MSc

Optimization Model for Biomass Plant Control

Supervised by Arlindo L. Oliveira

Open for application MSc

Adaptive Early Vision Networks: Learning Biologically Constrained Front-Ends for Robust Visual Recognition

Supervised by Arlindo L. Oliveira, Tiago Marques

Open for application MSc

Multi-Modal Autoencoder Framework for Predicting Plasma Proteome from Genomic Data Using AlphaGenome

Supervised by Arlindo L. Oliveira, Inês Duarte

Open for application MSc

Enhancing Fine-Grained Perceptual Understanding of Scientific Graphs in Vision Language Models

Supervised by Arlindo L. Oliveira, Hélder Dias

Open for application MSc

Generation of New Scientific Knowledge using LLMs

Supervised by Arlindo L. Oliveira, Vitória Cruz

Open for application MSc

Improving Retrieval Augmented Generation using LLMs

Supervised by Arlindo L. Oliveira

Open for application MSc

Multimodal Document Representation Learning

Supervised by Arlindo L. Oliveira

Open for application MSc

Deep neural network architectures for dual process computation

João Meneses Santos

Supervised by Arlindo L. Oliveira, Bruno Martins

Ongoing MSc

Assessing Large Language Models for information verification in Portuguese

Supervised by Arlindo L. Oliveira, Nuno Cardoso

Ongoing MSc

Handling Portuguese Varieties with Pre-Trained Language Models

Rodrigo Laia

Supervised by Bruno Martins, Arlindo L. Oliveira

Ongoing MSc

Reasoning in Large Language Models and the Dual-Process Theory of Cognition

Adrian Graur

Supervised by Arlindo L. Oliveira

Ongoing MSc

An Intelligent Software Agent for Personalized Tutoring

Natan Gloeh

Supervised by Arlindo L. Oliveira

Ongoing MSc

Developing a Sense of Humour in Large Language Models

Duarte Sousa

Supervised by Arlindo L. Oliveira

Ongoing MSc

Unmixing mass spectra using machine learning for species identification

Vasco Paisana

Supervised by Arlindo L. Oliveira

Ongoing MSc

Predicting Frequency and Claims of Health Insurance with Machine Learning techniques

Pedro Octávio Couto Gonçalves

Supervised by Arlindo L. Oliveira, Luís Miguel Veiga Vaz Caldas de Oliveira.

Finished MSc

WeatherIST - iOS application for detailed weather prevision in Continental Portugal

Tiago João Alves Duarte

Supervised by Arlindo L. Oliveira

Finished MSc

Imputation Techniques for Clinical Data of Ischemic Stroke Patients

Filipa de Matos Marques

Supervised by Arlindo L. Oliveira, Alexandre Paulo Lourenço Francisco.

Finished MSc

Applying Deep Learning to Medical Images

Ricardo Jorge da Silva Diniz

Supervised by Arlindo L. Oliveira, Mário Alexandre Teles de Figueiredo.

Finished MSc

Automated Assessment of Coronary Artery Stenosis in X-ray Angiography using Deep Neural Networks

Dinis Lourenço Tavares Rodrigues

Supervised by Arlindo L. Oliveira, Mário Alexandre Teles de Figueiredo.

Finished MSc

Deep Convolutional Encoder-Decoder Architectures for Clinically Relevant Coronary Artery Segmentation

João Lourenço Coelho da Silva

Supervised by Arlindo L. Oliveira, Mário Alexandre Teles de Figueiredo.

Finished MSc

Pathological Analysis of Tissues using Deep Neural Networks

Xavier Abreu Dias

Supervised by Arlindo L. Oliveira, João Cassis.

Finished MSc

Modelling and Inference of Gene Regulatory Networks

José Miguel Ranhada Vellez Caldas

Supervised by Arlindo L. Oliveira

Finished MSc

Biological Data Processing Using Grid Technologies

Sérgio Mendes Costa

Supervised by Arlindo L. Oliveira

Finished MSc

Automatic Annotation of Unstructured Fields in Medical Databases

Margarida Andreia Rosa Correia

Supervised by Arlindo L. Oliveira, Maria Luísa Torres Ribeiro Marques da Silva Coheur.

Finished MSc

MyWatson: A system for interactive acess of personal records

Pedro Miguel dos Santos Duarte

Supervised by Arlindo L. Oliveira

Finished MSc

Application of Deep Learning Techniques to the Diagnosis of Medical Images

Pedro Miguel Carreto Vaz

Supervised by Arlindo L. Oliveira

Finished MSc

Combining off and on-policy training in Deep Reinforcement

Alexandre João Gomes Borges

Supervised by Arlindo L. Oliveira

Finished MSc

Evaluating generalization in Deep Reinforcement Learning with Procedural Generated Environments

Miguel Borges Freire

Supervised by Arlindo L. Oliveira

Finished MSc

Using Knowledge Graphs to model Digital Footprints

André Carlos Ruano Andrade Cavalheiro

Supervised by Arlindo L. Oliveira

Finished MSc

Improving the Performance of Deep Neural Networks in Vision Tasks with Attention Mechanisms.

Rafael Gamanho Pedro

Supervised by Arlindo L. Oliveira

Finished MSc

A Modular Architecture for Model-Based Deep Reinforcement Learning

Tiago João Gaspar Ribeiro de Oliveira

Supervised by Arlindo L. Oliveira

Finished MSc

Using a Siamese Network to Accurately Detect Ischemic Stroke in Computed Tomography Scans

Supervised by Arlindo L. Oliveira, Catarina Fonseca

Finished MSc

Old photo and image restoration using deep learning techniques

Supervised by Arlindo L. Oliveira

Finished MSc

Neural Models for Generating Clinically Accurate Chest X-Ray Reports

Supervised by Arlindo L. Oliveira, Bruno Martins

Finished MSc

Pretraining the Vision Transformer using self-supervised methods for vision-based deep reinforcement learning

Supervised by Arlindo L. Oliveira

Finished MSc

Transaction-Based Entity Monitoring in a Client Due Diligence Context

Oleksandr Stopchak

Supervised by Arlindo L. Oliveira, Jacopo Bono

Finished MSc

Towards Improving Ischemic Stroke Functional Outcome Prediction with Computed Tomography Brain Scans Using Deep Learning

Gonçalo Oliveira

Supervised by Arlindo L. Oliveira, Catarina Fonseca

Finished MSc

Efficient Algorithms for Medical Image Segmentation

Supervised by Arlindo L. Oliveira

Finished MSc

Deep learning when data is scarce

Ana Pimenta Alves

Supervised by Arlindo Manuel Limede de Oliveira

Finished MSc

Operation log monitoring using machine learning

Supervised by Arlindo L. Oliveira, Fernando Silva

Finished MSc

Stenosis detection in coronary X-ray angiographies

Supervised by Arlindo L. Oliveira, Miguel Menezes

Finished MSc

Using graph embeddings to explore deep neural network architectures

Supervised by Arlindo L. Oliveira

Finished MSc

Using sequences of coronary angiograms to quantify the severity of stenosis

Mariana Serrão

Supervised by Arlindo L. Oliveira

Finished MSc

Using Large Language Models do solve the Abstraction and Reasoning Challenge

Guilherme Costa

Supervised by Arlindo L. Oliveira

Finished MSc

Representation learning of animal behavior

Gonçalo Goulart Oliveira

Supervised by Arlindo L. Oliveira, Adrien Jouary

Finished MSc

Using biological features to improve deep neural network models for vision

Lucas Alergy

Supervised by Arlindo L. Oliveira, Tiago Marques

Finished MSc

Modelos de causalidade para determinação do impacto de acções comerciais

Supervised by Arlindo L. Oliveira, Filipa Marques

Finished MSc

Using large language models to interact with personal information systems

Supervised by Arlindo L. Oliveira

Finished MSc

Biologically inspired CNNs for Medical Imaging tasks

Daniela Carvalho

Supervised by Arlindo L. Oliveira, Tiago Marques

Finished MSc

Stroke Segmentation from Computed Tomography scans

Supervised by Arlindo L. Oliveira

Finished MSc

Transfer single-cell foundation models to predict drug resistance in cancer

Gonçalo Gonçalves

Supervised by Arlindo L. Oliveira, Emanuel Gonçalves

Finished MSc

Hybrid Prompt Optimization for Sparse Autoencoder Feature Visualization in Large Language Models

João Marques Cardoso

Supervised by Arlindo L. Oliveira, Bruno Martins

Finished MSc

Siamese Transformer Networks for Improving Address Matching

Supervised by Arlindo L. Oliveira

Finished MSc