journal · Genome biology · 2019

The bio.tools registry of software tools and data resources for the life sciences

Jon Ison, Hans Ienasescu, Piotr Jaroslaw Chmura, Emil Rydza, Hervé Ménager, Matúš Kalaš, Veit Schwämmle, Björn Grüning, Niall Beard, Rodrigo López, Séverine Duvaud, Heinz Stockinger, Bertil Persson, Radka Svobodová Vařeková, Tomáš Raček, Jiřı́ Vondrášek, Hedi Peterson, Ahto Salumets, Inge Jonassen, Rob Hooft, Tommi Nyrönen, Alfonso Valencia, Salvador Capella-Gutiérrez, Josep Lluis Gelpí, Federico Zambelli, Babis Savakis, Brane Leskošek, Kristoffer Rapacki, Christophe Blanchet, Rafael C. Jiménez, Arlindo L. Oliveira, Gert Vriend, Olivier Collin, Jacques van Helden, Peter Løngreen, Søren Brunak · 86 citations

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Summary AI-generated

TL;DR
As life scientists increasingly rely on workflows to turn data into knowledge, finding the right tools and databases is crucial.
Problem
Not specified in the abstract.
Method
Not specified in the abstract.
Results
Not specified in the abstract.
Contributions
Not specified in the abstract.
Limitations
Not specified in the abstract.
Takeaways
This paper outlines a pan-European enterprise, bio.tools, which provides a comprehensive catalogue of tools and databases for life science workflows. The registry not only indicates where to find these resources, but also supplies a wide variety of practical information.
Applications
The bio.tools catalogue can be used to flexibly discover and utilize software and data resources needed for life science workflows.
Topics
Genome biology, bioinformatics
For industry
Biotechnology and bioinformatics sectors.
Why it matters
Supports bioinformaticians and biologists in managing and utilizing diverse life science tools to convert data into knowledge.

Abstract

Bioinformaticians and biologists rely increasingly upon workflows for the flexible utilization of the many life science tools that are needed to optimally convert data into knowledge. We outline a pan-European enterprise to provide a catalogue ( https://bio.tools ) of tools and databases that can be used in these workflows. bio.tools not only lists where to find resources, but also provides a wide variety of practical information.

References within the group

Jon Ison, Hans Ienasescu, Piotr Jaroslaw Chmura, Emil Rydza, Hervé Ménager, Matúš Kalaš, Veit Schwämmle, Björn Grüning, Niall Beard, Rodrigo López, Séverine Duvaud, Heinz Stockinger, Bertil Persson, Radka Svobodová Vařeková, Tomáš Raček, Jiřı́ Vondrášek, Hedi Peterson, Ahto Salumets, Inge Jonassen, Rob Hooft, Tommi Nyrönen, Alfonso Valencia, Salvador Capella-Gutiérrez, Josep Lluis Gelpí, Federico Zambelli, Babis Savakis, Brane Leskošek, Kristoffer Rapacki, Christophe Blanchet, Rafael C. Jiménez, Arlindo L. Oliveira, Gert Vriend, Olivier Collin, Jacques van Helden, Peter Løngreen, Søren Brunak
Genome biology journal summary

Cited by (group publications)

Jon Ison, Hans Ienasescu, Piotr Jaroslaw Chmura, Emil Rydza, Hervé Ménager, Matúš Kalaš, Veit Schwämmle, Björn Grüning, Niall Beard, Rodrigo López, Séverine Duvaud, Heinz Stockinger, Bertil Persson, Radka Svobodová Vařeková, Tomáš Raček, Jiřı́ Vondrášek, Hedi Peterson, Ahto Salumets, Inge Jonassen, Rob Hooft, Tommi Nyrönen, Alfonso Valencia, Salvador Capella-Gutiérrez, Josep Lluis Gelpí, Federico Zambelli, Babis Savakis, Brane Leskošek, Kristoffer Rapacki, Christophe Blanchet, Rafael C. Jiménez, Arlindo L. Oliveira, Gert Vriend, Olivier Collin, Jacques van Helden, Peter Løngreen, Søren Brunak
Genome biology journal summary

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